abiogenesis Not to be confused with "spontaneous generation," it is the theory that life originally arose from non-living matter, given the proper conditions during the early earth.
analogy The case of similar function despite different structures; the opposite of paralogy. Similar to the evolutionary concept of convergence.
character A feature or trait of an organism. Characters have a specific structure and function.
cladistics A method for constructing phylogenies based on shared derived characters of species, originally rigorously detailed by Willi Hennig in 1950.
convergence Convergence is an amorphous evolutionary term that is used in somewhat different senses by different authors (or even by the same people at different times). It generally refers to similarities between organisms that evolved independently, i.e. similarities not directly inherited from a common ancestor. Strict convergence of both function and structure is rare, except in trivial cases. Convergence of form and function is common, and is predicted by natural selection. In a sense, convergence is the opposite of homology.
derived characters Among a given group of organisms, the shared derived characters are generally the less common characters. The evolutionary interpretation is that these characters of organisms are more recently evolved. They are contrasted with primitive characters. Shared derived characters should have the same structure and function.
function The function concept is complex. Functions are not simply anything that appears "useful"; this is a subjective teleological notion. An objective definition of function is any identifiable process performed by a biological entity that is necessary for the successful reproduction of that entity. A function of a certain structure is a particular consequence of that structure responsible for that structure's continued existence in terms of reproductive success. Functions are relative; some similar structures function better than others. If structure A results in better reproductive success than another similar structure B, then structure A is more functional than B. Thus, function depends on context; gills have no function on land and lungs do not function underwater. Also, sometimes it is necessary to infer the function of a character based on its form (e.g. pterodactyl wings were used for flight) (Wright 1973; Cummins 1975; Millikan 1989; Reeve and Sherman 1993). In general the functionality of a given structure can be experimentally measured and quantified (a common practice in genetics).
homology Refers to similar structures, regardless of function. For evolutionists, structures are homologous only if they were derived from the same structure in a common ancestor.
intermediate form A fossil or modern species that displays characters definitive of two or more different taxa or that displays characters morphologically intermediate between two different taxa. The existence of intermediate forms is a prediction of common descent. An intermediate is not necessarily a common ancestor or even an actual ancestor of a modern species. For example, the intermediate species Archaeopteryx displays characters definitive of two different taxa (e.g. dromaeosaur dinosaurs and birds), yet Archaeopteryx is probably not an ancestor of modern birds.
macroevolution Evolution on the grand scale resulting in the origin of higher taxa. In evolutionary theory it thus entails common ancestry, descent with modification, the genealogical relatedness of all life, transformation of species, large scale functional and structural changes, etc.
microevolution Change within species; relatively minor change in the composition of a species' gene pool with time.
ontogeny The development of an individual organism, especially the process studied in the science of embryology.
paralogy Similarity of structure despite difference of function; the opposite of analogy.
phenotype The morphological, physiological, biochemical, behavioral, and other properties of an organism, manifested throughout its life.
phylogeny A genealogy of species; the history of descent of taxa from common ancestors, including the relative times at which species branched or diverged from each other.
primitive characters Contrasting with derived characters, they are the more common shared characters of a given group of organisms. Like derived characters, they also have the same structure and function. The evolutionary interpretation is that these characters evolved earlier than derived characters.
species As usually used within this article, a species is a reproductively isolated group of organisms capable of interbreeding in the wild and producing viable, fertile offspring. This is known as the Biological Species Concept (BSC). An alternative statement of the BSC defines a species as the most inclusive group of sexual and cross-fertilizing individuals which share a common gene pool. However, this concept breaks down for asexual species, fossil species, and even sexual species in many cases. In reality there are only degrees of reproductive and genetic isolation, so species are not absolute entities. Joseph Boxhorn has given a more detailed analysis of the species concept in the "Observed Instances of Speciation" FAQ. Note, the BSC has interesting implications for the nature of the last universal common ancestor of all life, especially if horizontal genetic transfer was extensive then (as it is today between the different unicellular "species" of bacteria, archaea, and eukaryotes).
structure Relative position and shape of an organism's various parts; the pattern underlying its form. Similar structures have similar positions and shapes of parts; however, relative size can vary considerably. Should not be confused with "form." A bat and insect wing both have similar forms (e.g. they are both elongated and flat and can be flapped), but they have very different underlying structures.
transitional form See intermediate form.
vestigial characters The defintion used in this article is a working definition. A vestigial character is a character that for all intents and purposes has no obvious or important function, yet is structurally similar to functional characters in other species ("importance" here is measured in terms of function, i.e. effects on organismal fitness). If the character appears reduced and rudimentary compared to the same structure in other organisms, and the structure has obvious important functions in the majority of other organisms, then it is considered a vestigial structure. The most rigorous test is to remove the character and observe the organism's viability and reproductive success. If these remain unchanged, the character is definitively vestigial.